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John Mickett

Senior Oceanographer

Email

jmickett@apl.washington.edu

Phone

206-897-1795

Department Affiliation

Ocean Physics

Education

B.S. Marine Science, U.S. Coast Guard Academy, 1994

M.S. Physical Oceanography, University of Washington - Seattle, 2002

Ph.D. Physical Oceanography, University of Washington - Seattle, 2007

Projects

Submesoscale Mixed-Layer Dynamics at a Mid-Latitude Oceanic Front

SMILE: the Submesoscale MIxed-Layer Eddies experiment

This experiment is aimed at increasing our understanding of the role of lateral processes in mixed-layer dynamics through a series of ship surveys and Lagrangian array deployments. Instrument deployments and surveys target the upper ocean's adjustment to winter atmospheric forcing events in the North Pacific subtropical front, roughly 800 km north of Hawaii.

This study will improve understanding of 1–10-km scale lateral processes in three-dimensional mixed-layer dynamics in a region of above-average atmospheric forcing, typical mid-ocean mesoscale advection and straining, and typical submesoscale activity. The results will improve the physical basis of mixed-layer parameterizations, leading to better model predictions of air-sea fluxes, gas transfer, and biological productivity.

1 Mar 2017

Tasmania Internal Tide Experiment

The Tasmanian continental slope will be instrumented with a range of tools including moored profiler, chi-pods, CTDs, and gliders to understand the process, strength, and distribution of ocean mixing from breaking internal waves.

27 Nov 2011

Internal Waves in Straits Experiment (IWISE)

With field work in the summers of 2010 and 2011, this project focuses on understanding the mechanisms controlling the generation of internal tides in the two-ridge system of Luzon Strait, along with their propagation, contribution to mixing (dissipation) and interaction with the Kuroshio.

27 Sep 2011

More Projects

Videos

Environmental Sample Processor: A Sentry for Toxic Algal Blooms off the Washington Coast

An undersea robot that measures harmful algal species has been deployed by APL, UW, and NOAA researchers off the Washington coast near La Push. Algal bloom toxicity data are relayed to shore in near-real time and displayed through the NANOOS visualization system. The Environmental Sample Processor, or ESP, is taking measurements near the Juan de Fuca eddy, which is a known incubation site for toxic blooms that often travel toward coastal beaches, threatening fisheries and human health.

22 Jun 2016

ORCA Tracks the 'Blob'

A 'blob' of very warm surface water developed in the northeastern Pacific Ocean in 2014–2015 and its influence extended to the inland waters of Puget Sound throughout the summer of 2015. The unprecedented conditions were tracked by the ORCA (Oceanic Remote Chemical Analyzer) buoy network — an array of six heavily instrumented moored buoys in the Sound. ORCA data provided constant monitoring of evolving conditions and allowed scientists to warn of possible fish kill events in the oxygen-starved waters of Hood Canal well in advance.

The ORCA network is maintained by a partnership among APL-UW, the UW College of the Environment, and the UW School of Oceanography.

3 Nov 2015

ArcticMix 2015

APL-UW physical oceanographers John Mickett and Mike Gregg joined SIO colleagues during September 2015 in the Beaufort Sea aboard the R/V Sikuliaq to measure upper ocean mixing that billows heat from depth to the surface. These mixing dynamics may be an important factor in hastening sea ice melt during summer and delaying freeze-up in the fall.

14 Oct 2015

More Videos

Publications

2000-present and while at APL-UW

Distribution, formation, and evolution of subsurface secondary acoustic ducts from global ocean modeling and observations

Prakash, K.R., R.R. Harcourt, J.B. Mickett, G. Xu, and L. Thompson, "Distribution, formation, and evolution of subsurface secondary acoustic ducts from global ocean modeling and observations," J. Geophys. Res., 131, doi:10.1029/2024JC022230, 2026.

More Info

10 Apr 2026

Monthly mean reanalysis from assimilating global ocean circulation models spanning 27 years is used to study subsurface secondary acoustic ducts, which provide waveguides for the transmission of mid-frequency sound. A systematic diagnosis of secondary ducts from monthly mean temperature and salinity fields characterizes their distribution and properties in two global ocean models. Results from both models are compared against a monthly gridded product derived from Argo float observations to evaluate the climatology, distribution, and formation mechanisms of these ducts. Geographical and seasonal patterns reveal two distinct formation mechanisms for subsurface ducts. Regions dominated by subducted pycnostads, associated with mode waters, exhibit well-mixed layers with weak stratification dominated by temperature. In contrast, ducts formed within the permanent pycnocline are characterized by stratification dominated by salinity, especially in subpolar regions. A constraint limiting bulk stratification of the upward-refracting layer as a function of density ratio or of Turner angle across the layer is obtained from linearized equations of state for density and sound speed. Subsurface ducts diagnosed from nonlinear equations for density and sound speed conform to this approximated constraint, which accounts for the global decomposition of modeled ducts into two partially overlapping branches: one with the upward-refracting layer stratified primarily by salinity and the other, more weakly stratified. The distribution of weakly stratified layers largely conforms to known mode waters. The formation of salinity-dominated upward-refracting layers in ducts is linked to stratification generated annually by one-dimensional processes at the base of deep winter mixed layers, freshened by precipitation and runoff.

Taming turbulence closure in tidally driven simulations of coastal oceans and estuaries

Harcourt, R.R., J.B. Mickett, and K.R. Prakash, "Taming turbulence closure in tidally driven simulations of coastal oceans and estuaries," Cont. Shelf Res., 296, doi:10.1016/j.csr.2025.105596, 2026.

More Info

1 Jan 2026

A widespread prevalence of subsurface acoustic ducts impacting mid-frequency sound propagation was observed over the outer shelf and the continental slope during a field experiment in July–August 2022 in the Pacific Northwest coastal ocean of North America. Simulations of the coastal shelf ocean using LiveOcean, a tidally driven operational model (MacCready et al., 2021), based upon a widely used variant of the Regional Ocean Modeling System (ROMS), were compared with observations of the thermohaline stratification layers responsible for the ducts, and found to have a nearly complete absence of these acoustic features due to excessive parametrized mixing. After implementing additional realistic constraints in the 'k-ε' second moment closure (SMC) to control instabilities in the turbulence mixing model with low background mixing, the source of instabilities was identified in a coding error for the default, third-order upstream advection of the turbulence parameters for TKE k and its dissipation epsilon, a longstanding and significant bug impacting mixing parametrization, and one also found in the older SMC 'Mellor-Yamada 2.5' mixing parametrization option in ROMS. With code improvements, LiveOcean was able to successfully simulate the production of observed subsurface acoustic ducts. The primary process for generating the ducts along the outer shelf involves the southward transport of low sound speed water during upwelling, combined with the cross-shelf displacement of higher sound speed water from offshore beneath this layer in bottom-driven Ekman transport.

Using the second-generation Environmental Sample Processor to provide near real-time observations of harmful algae and assess biodiversity and ecosystem change

Moore, S.K., N.G. Adams, J.B. Mickett, C.M. Mikulski, M. Michel-Hart, J.M. Birch, B. Roman, and J.A. Newton, "Using the second-generation Environmental Sample Processor to provide near real-time observations of harmful algae and assess biodiversity and ecosystem change," Benefits of Ocean Observing Catalog, 4, doi:10.15351/3068-2320.1149, 2026.

More Info

1 Jan 2026

The second-generation Environmental Sample Processor (2G-ESP) is a sophisticated autonomous sensor platform and a key component of offshore observing efforts designed to mitigate the societal impacts of harmful algal blooms (HABs) in the Pacific Northwest. Deployed as part of a moored observatory, the 2G-ESP generates near real-time data on HAB organisms and the biotoxin domoic acid, providing critical HAB early warning and directly informing HAB forecasts and fisheries management decisions. In addition, the platform’s capacity to archive environmental DNA enables retrospective analyses of biodiversity and ecosystem change. These capabilities facilitate interdisciplinary scientific collaboration and information sharing, ultimately enhancing our collective understanding of HAB dynamics and broader ecosystem health.

More Publications

In The News

Autonomous watercraft collects ocean samples

Lincoln County Leader, Steve Card

A state-of-the-art autonomous watercraft was launched from Newport’s Yaquina Bay on Tuesday, July 23, with a mission of collecting ocean water samples for the purpose of testing for water toxins.

31 Jul 2024

Ocean trash: What you need to know

KCTS9/EarthFix , Ken Christensen

Ocean currents carry man-made debris to remote corners of the planet—even to places mostly untouched by people. And that makes it difficult to clean up, as APL-UW's Senior Oceanographer John Mickett demonstrates during his recent sojourn to Vancouver Island, B.C. to recover a wayward research buoy.

11 Dec 2017

UW, NOAA deploy ocean robot to monitor harmful algal blooms off Washington coast

UW News and Information, Hannah Hickey

John Mickett, an oceanographer at the UW Applied Physics Laboratory, led the deployment of the new instrument with Stephanie Moore, a scientist at NOAA’s Northwest Fisheries Science Center, as part of a larger collaborative project.

25 May 2016

More News Items

Acoustics Air-Sea Interaction & Remote Sensing Center for Industrial & Medical Ultrasound Electronic & Photonic Systems Environmental & Information Systems Ocean Engineering Ocean Physics Polar Science Center
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